Added KaggleERN dataset#738
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WubbzyFromWuzzleburg wants to merge 1 commit intosunlabuiuc:masterfrom
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LGTM, but probably need to update the code to support the newest changes. |
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The test failed with error |
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Contributor: Elliott Huang (elliott500800@gmail.com)
Contribution Type: New Dataset + Documentation + Example Script
Description:
This PR adds support for the KaggleERN (INRIA BCI Challenge) EEG dataset in PyHealth. It introduces a
KaggleERNDatasetclass that validates the expected raw folder structure and provides an offline preprocessing utility to convert raw EEG CSV files into fixed-length epoch/window pickle files for downstream training (keeping the pickle schema compatible with the provided fine-tuning workflow). This PR also updates the API documentation to include the new dataset and adds an end-to-end fine-tuning example for EEGPT on KaggleERN, including instructions for downloading and placing the pretrained EEGPT checkpoint.Files to Review:
pyhealth/datasets/kaggleern.py— KaggleERN dataset class + offline preprocessing to window pickle formatpyhealth/datasets/configs/kaggleern.yaml— Dataset config entry (tables/attributes schema)pyhealth/datasets/__init__.py— ExposeKaggleERNDatasetin the datasets namespaceexamples/kaggleern_finetune_EEGPT.py— Fine-tuning example script (paths are placeholders; includes pretrained checkpoint notes)docs/api/datasets.rst— Register KaggleERN in dataset API docs indexdocs/api/datasets/pyhealth.datasets.KaggleERNDataset.rst— New API doc page forpyhealth.datasets.KaggleERNDatasettests/core/test_kaggleern.py— Unit tests for dataset verification and optional preprocessing integration